PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G248200.1
Common NamePHAVU_002G248200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 373aa    MW: 42628.4 Da    PI: 6.5076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G248200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005379101323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Phvul.002G248200.1  79 CSydGCGKTFIDAGALRKHSHIH 101
                         78889**************7766 PP

2zf-C2H216.52.4e-05106130123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Phvul.002G248200.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                         9********************8877 PP

3zf-C2H221.75.3e-07136160123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk Fs   nL++H++tH
  Phvul.002G248200.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160
                         89**********************9 PP

4zf-C2H217.89.4e-06166190123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  dCgk++ + + Lk+Hi +H
  Phvul.002G248200.1 166 HICPypDCGKRYAHEYKLKNHIASH 190
                         679999*****************96 PP

5zf-C2H212.60.00041230255123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + L+ H+++ H
  Phvul.002G248200.1 230 YACPydGCEKAYIHEYKLRLHLKReH 255
                         89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.3E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576676.23E-14117169No hitNo description
Gene3DG3DSA:3.30.160.603.5E-20127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-9161192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028166190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473166195IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-5225253No hitNo description
Gene3DG3DSA:3.30.160.606.3E-9226252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201230260IPR007087Zinc finger, C2H2
SMARTSM003550.009230255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEIHYSSSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMILKWVTED TLKTFKEKTT  60
EPTMPEPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE  180
YKLKNHIASH HEKNASVDVT KYTTPPSEKQ TKTAKPSGGA YGSASSDRPY ACPYDGCEKA  240
YIHEYKLRLH LKREHPGLIP DENAEHAQAN NVDNEMDEAS DQDAYLAKRS NGKIQKQSRP  300
KPSHKLPPSK IAKRKVSTPT LTVNKNSWSV KDEPFDEEDS EETEEDRDNV EDGWRYPAGN  360
NEDDDEETEY ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-35791908119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970320.0BT097032.1 Soybean clone JCVI-FLGm-21D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159566.10.0hypothetical protein PHAVU_002G248200g
SwissprotQ2V3L31e-155Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLV7CQL80.0V7CQL8_PHAVU; Uncharacterized protein
STRINGGLYMA05G30150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-145C2H2 family protein